STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000009005Small G protein signaling modulator 1b. (1061 aa)    
Predicted Functional Partners:
LOC106567664
Rab5 GDP/GTP exchange factor-like.
     
 0.650
rabgef1
Rab5 GDP/GTP exchange factor isoform X2.
     
 0.650
LOC106612901
Rab5 GDP/GTP exchange factor-like.
     
 0.650
RABX5
Rab5 GDP/GTP exchange factor.
     
 0.650
LOC106580958
Rab5 GDP/GTP exchange factor-like.
     
 0.650
pex1
Peroxisome biogenesis factor 1 isoform X2.
     
 0.472
rab9a
Ras-related protein Rab-9A.
    
 
 0.465
RAB9A
Ras-related protein Rab-9A-like.
    
 
 0.465
LOC106575287
Ras-related protein Rab-9A-like.
    
 
 0.465
LOC106612197
Ras-related protein Rab-9B-like.
    
 
 0.465
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.