LOC106606213 protein (Salmo salar) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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co-expression

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[Homology]

Score

LOC106606213

Coilin-like. (742 aa)

Predicted Functional Partners:

rig-I

0.882

LOC106582592

0.768

nme8

0.768

ENSSSAP00000093050

0.768

wdr90

0.700

TRAF7

0.683

iqcd

0.639

LOC106582056

0.613

ccdc65

0.611

cfap43

0.610

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000093050	LOC106582056	ENSSSAP00000093050	ENSSSAP00000100491	annotation not available	EF-hand domain-containing family member B-like isoform X2.	0.898
ENSSSAP00000093050	LOC106582592	ENSSSAP00000093050	ENSSSAP00000060678	annotation not available	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	0.932
ENSSSAP00000093050	LOC106606213	ENSSSAP00000093050	ENSSSAP00000009012	annotation not available	Coilin-like.	0.768
ENSSSAP00000093050	ccdc65	ENSSSAP00000093050	ENSSSAP00000062853	annotation not available	Coiled-coil domain-containing protein 65.	0.930
ENSSSAP00000093050	cfap43	ENSSSAP00000093050	ENSSSAP00000112972	annotation not available	Cilia- and flagella-associated protein 43 isoform X1.	0.884
ENSSSAP00000093050	iqcd	ENSSSAP00000093050	ENSSSAP00000081216	annotation not available	IQ domain-containing protein D.	0.861
ENSSSAP00000093050	nme8	ENSSSAP00000093050	ENSSSAP00000093037	annotation not available	Thioredoxin domain-containing protein 3 isoform X2; Belongs to the NDK family.	0.932
ENSSSAP00000093050	wdr90	ENSSSAP00000093050	ENSSSAP00000064648	annotation not available	WD repeat-containing protein 90.	0.932
LOC106582056	ENSSSAP00000093050	ENSSSAP00000100491	ENSSSAP00000093050	EF-hand domain-containing family member B-like isoform X2.	annotation not available	0.898
LOC106582056	LOC106582592	ENSSSAP00000100491	ENSSSAP00000060678	EF-hand domain-containing family member B-like isoform X2.	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	0.898
LOC106582056	LOC106606213	ENSSSAP00000100491	ENSSSAP00000009012	EF-hand domain-containing family member B-like isoform X2.	Coilin-like.	0.613
LOC106582056	ccdc65	ENSSSAP00000100491	ENSSSAP00000062853	EF-hand domain-containing family member B-like isoform X2.	Coiled-coil domain-containing protein 65.	0.894
LOC106582056	cfap43	ENSSSAP00000100491	ENSSSAP00000112972	EF-hand domain-containing family member B-like isoform X2.	Cilia- and flagella-associated protein 43 isoform X1.	0.982
LOC106582056	iqcd	ENSSSAP00000100491	ENSSSAP00000081216	EF-hand domain-containing family member B-like isoform X2.	IQ domain-containing protein D.	0.902
LOC106582056	nme8	ENSSSAP00000100491	ENSSSAP00000093037	EF-hand domain-containing family member B-like isoform X2.	Thioredoxin domain-containing protein 3 isoform X2; Belongs to the NDK family.	0.898
LOC106582056	wdr90	ENSSSAP00000100491	ENSSSAP00000064648	EF-hand domain-containing family member B-like isoform X2.	WD repeat-containing protein 90.	0.883
LOC106582592	ENSSSAP00000093050	ENSSSAP00000060678	ENSSSAP00000093050	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	annotation not available	0.932
LOC106582592	LOC106582056	ENSSSAP00000060678	ENSSSAP00000100491	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	EF-hand domain-containing family member B-like isoform X2.	0.898
LOC106582592	LOC106606213	ENSSSAP00000060678	ENSSSAP00000009012	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	Coilin-like.	0.768
LOC106582592	ccdc65	ENSSSAP00000060678	ENSSSAP00000062853	Thioredoxin domain-containing protein 3 homolog; Belongs to the NDK family.	Coiled-coil domain-containing protein 65.	0.930