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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106606213Coilin-like. (742 aa)    
Predicted Functional Partners:
ENSSSAP00000116555
annotation not available
    
   0.587
LOC106572481-2
Ubiquitin-conjugating enzyme E2 variant 1 isoform X2.
     
 0.541
LOC106572481
Ubiquitin-conjugating enzyme E2 variant 1 isoform X1.
     
 0.541
ENSSSAP00000041153
annotation not available
     
 0.541
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
   
 0.537
LOC106578539
rRNA 2'-O-methyltransferase fibrillarin-like.
   
 
 0.528
fbrl
Salmo salar rRNA 2-O-methyltransferase fibrillarin (fbrl), mRNA.
   
 
 0.528
LOC106573999
TGF-beta-activated kinase 1 and MAP3K7-binding protein 3-like.
    
 0.524
LOC106607744
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X5.
    
 0.524
TAB2
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X1.
    
 0.524
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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