STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106569683Mitochondrial coenzyme A transporter SLC25A42; Belongs to the mitochondrial carrier (TC 2.A.29) family. (335 aa)    
Predicted Functional Partners:
LOC106587408
Retinitis pigmentosa 1-like 1 protein isoform X1.
   
 0.978
TYMS
Thymidylate synthetase.
  
 0.890
tyms
Thymidylate synthase.
  
 0.890
LOC106562296
Centromere protein N-B-like.
   
 0.877
cenpn
Centromere protein N.
   
 0.877
LOC106588720
Centromere protein K-like isoform X4.
   
 0.870
LOC106586549
Centromere protein K-like.
   
 0.870
rfc3
Replication factor C subunit 3 isoform X1.
   
  
 0.868
LOC106567863
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.868
rir1
Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
  
 
 0.868
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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