STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tent4aNon-canonical poly(A) RNA polymerase PAPD7 isoform X2. (764 aa)    
Predicted Functional Partners:
LOC106611791
Zinc finger CCHC domain-containing protein 7-like.
   
 
 0.895
exosc10
Exosome component 10.
   
 
 0.818
LOC100380870
Superkiller viralicidic activity 2-like 2.
   
 
 0.779
LOC106568406
Superkiller viralicidic activity 2-like 2 isoform X1.
   
 
 0.779
LOC106573631
Zinc finger CCHC domain-containing protein 14-like.
   
 
 0.717
Zcchc14
Zinc finger CCHC-type containing 14.
   
 
 0.717
LOC106563893
Splicing factor, arginine/serine-rich 15-like.
    
 
 0.628
SCAF8
Protein SCAF8-like isoform X2.
    
 
 0.628
ENSSSAP00000055404
annotation not available
    
 
 0.628
SCAF8-2
Protein SCAF8-like isoform X1.
    
 
 0.628
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.