STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trad1TRAF-type zinc finger domain-containing protein 1. (253 aa)    
Predicted Functional Partners:
xaf1
XIAP-associated factor 1.
  
   
0.442
LOC106602323
Probable E3 ubiquitin-protein ligase HERC3 isoform X1.
   
    0.437
rtp3
Receptor-transporting protein 3.
   
    0.437
LOC106589450
Poly [ADP-ribose] polymerase 9-like isoform X2.
   
    0.437
irf-3
Interferon regulatory factor 3 isoform X1.
   
    0.437
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.