STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpv1Transient receptor potential cation channel subfamily V member 1 isoform X1; Belongs to the transient receptor (TC 1.A.4) family. (809 aa)    
Predicted Functional Partners:
trpm5
Transient receptor potential cation channel subfamily M member 5.
   
 
 0.766
LOC106611313
Ensconsin-like.
    
 
 0.737
trpa1
Transient receptor potential cation channel subfamily A member 1; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.728
trpc1
Short transient receptor potential channel 1; Belongs to the transient receptor (TC 1.A.4) family.
     
 0.666
LOC106585702
Transient receptor potential cation channel subfamily M member 6-like isoform X1.
   
 
 0.654
LOC106580069
Transient receptor potential cation channel subfamily M member 7-like.
   
 
 0.654
LOC106595234
Transient receptor potential cation channel subfamily M member 2-like.
     
 0.613
LOC106582587
Transient receptor potential cation channel subfamily M member 2-like.
     
 0.613
lepr
Leptin receptor isoform X1.
      
 0.601
LOC106587734
Transient receptor potential cation channel subfamily M member 7-like isoform X2.
   
 
 0.594
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.