STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmgxb3HMG domain-containing protein 3 isoform X3. (1318 aa)    
Predicted Functional Partners:
sass6
Spindle assembly abnormal protein 6 homolog.
      
 0.593
NADK2
NAD kinase 2, mitochondrial.
      
 0.589
LOC106563865
NAD kinase 2, mitochondrial; Mitochondrial NAD(+) kinase that phosphorylates NAD(+) to yield NADP(+). Can use both ATP or inorganic polyphosphate as the phosphoryl donor.
      
 0.589
rwdd2b
RWD domain-containing protein 2B.
      
 0.582
nrsn1
Neurensin-1.
      
 0.563
LOC106589055
Neurensin-1-like.
      
 0.563
ruxe
Small nuclear ribonucleoprotein E.
      
 0.542
ruxe-2
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
      
 0.542
rsmb
Small nuclear ribonucleoprotein-associated protein.
      
 0.513
gsr
Zinc transporter 9.
      
 0.511
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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