STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106562143Lysyl oxidase homolog 1-like. (577 aa)    
Predicted Functional Partners:
fbln5
Fibulin-5.
   
 
 0.614
LOC106574899
Latent-transforming growth factor beta-binding protein 3-like.
   
 
 0.614
LOC106575133
Microfibrillar-associated protein 5-like.
   
 
 0.608
rnf17
RING finger protein 17 isoform X3.
    
 
 0.595
LOC106610306
Caspase-6-like isoform X1; Belongs to the peptidase C14A family.
    
 0.542
CASP6
Caspase-6-like isoform X1; Belongs to the peptidase C14A family.
    
 0.542
LOC106584865
Stomatin-like protein 1.
    
 0.531
ENSSSAP00000024395
annotation not available
   
  0.527
ENSSSAP00000028539
annotation not available
   
  0.527
ENSSSAP00000086728
annotation not available
   
  0.527
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.