STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609781Kelch domain-containing protein 10-like. (416 aa)    
Predicted Functional Partners:
ube2h
Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family.
      
 0.695
cssa13hxorf56
UPF0428 protein CXorf56 homolog.
   
   0.619
LOC106611439
Pleckstrin homology domain-containing family D member 1-like.
   
  
 0.599
dcaf10
DDB1- and CUL4-associated factor 10.
    
 
 0.589
LOC106569160
PH domain leucine-rich repeat-containing protein phosphatase 1-like.
   
  
 0.554
LOC106571395
Cation-independent mannose-6-phosphate receptor-like isoform X1.
     
 0.547
LOC106607799
Cation-independent mannose-6-phosphate receptor-like.
     
 0.547
drg1
Developmentally-regulated GTP-binding protein 1.
    
   0.546
drg1-2
Developmentally-regulated GTP-binding protein 1.
    
   0.546
rnf165
RING finger protein 165 isoform X1.
      
 0.519
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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