STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609909Choline transporter-like protein 1; Belongs to the CTL (choline transporter-like) family. (681 aa)    
Predicted Functional Partners:
prkcz
Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily.
      
 0.550
ttc6
Tetratricopeptide repeat protein 6 isoform X1.
   
    0.448
ubl7
Ubiquitin-like 7 isoform X1.
   
  
 0.428
LOC106587231
Ubiquitin-like protein 7 isoform X1.
   
  
 0.428
ENSSSAP00000040646
Transmembrane gamma-carboxyglutamic acid protein 1-like.
      
 0.418
LOC106613522
Transmembrane gamma-carboxyglutamic acid protein 1-like isoform X2.
      
 0.418
il4/13a
Interleukin 4/13A precursor.
      
 0.405
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.