STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564193Calmodulin-regulated spectrin-associated protein 3-like. (1187 aa)    
Predicted Functional Partners:
LOC106600571
WD repeat-containing protein 47-like.
   
 
 0.559
LOC106569671
WD repeat-containing protein 47-like.
   
 
 0.559
LOC106605063
Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5-like isoform X1.
    
 
 0.445
LOC106574168
WD repeat-containing protein 47-like isoform X1.
   
 
 0.418
appl1
DCC-interacting protein 13-alpha isoform X2.
   
   0.411
APPL2
DCC-interacting protein 13-beta-like.
   
   0.411
LOC106560977
DCC-interacting protein 13-beta-like.
   
   0.411
LOC106582615
DCC-interacting protein 13-alpha-like isoform X2.
   
   0.411
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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