STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609534Ribosomal L1 domain-containing protein 1-like isoform X1. (341 aa)    
Predicted Functional Partners:
ENSSSAP00000092906
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.999
brix1
Brix domain-containing protein 2.
   
 
 0.998
rpf1
Ribosome production factor 1.
   
 
 0.997
noc2l
Nucleolar complex protein 2 homolog.
   
 
 0.997
LOC106563613
U3 small nucleolar RNA-associated protein 14 homolog A-like.
   
 
 0.996
LOC106579040
LOW QUALITY PROTEIN: nucleolar complex protein 3 homolog.
   
 
 0.996
nat10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.995
mak16
Protein MAK16 homolog; Belongs to the MAK16 family.
   
 
 0.995
nol6
Nucleolar protein 6.
   
 
 0.995
LOC106579528
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
   0.994
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.