STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106567819Reticulon. (253 aa)    
Predicted Functional Partners:
LOC106593828
Translocation protein SEC63 homolog isoform X2.
    
 
 0.627
LOC100194664
Vps20-associated 1 like 1 isoform X1.
    
   0.605
LOC106571414
Vacuolar protein sorting-associated protein VTA1 homolog.
    
   0.605
snx15
Sorting nexin-15.
    
   0.573
reep5
Receptor expression-enhancing protein.
    
 
 0.528
LOC106601650
Tumor necrosis factor receptor superfamily member 16-like.
     
 0.519
LOC106579090
Tumor necrosis factor receptor superfamily member 16-like.
     
 0.519
LOC106604157
Synaptopodin-like.
   
 
 0.515
LOC106564841
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
   
  
 0.514
LOC106579281
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
   
  
 0.514
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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