STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100194721RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (380 aa)    
Predicted Functional Partners:
LOC106606043
RNA-binding protein 24-B-like.
  
 
 0.735
ENSSSAP00000021569
annotation not available
  
 
 0.735
ENSSSAP00000022354
annotation not available
  
 
 0.735
ENSSSAP00000061457
annotation not available
  
 
 0.735
LOC106588906
RNA-binding protein 24.
  
 
 0.725
LOC106582916
RNA-binding protein 38-like isoform X1.
  
 
 0.714
LOC106565805
RNA-binding protein 38-like.
  
 
 0.712
rbpms
RNA-binding protein with multiple splicing.
   
 
 0.681
rbm24
RNA-binding protein 24.
  
 
0.632
LOC106571937
RNA-binding protein 38-like.
  
 
0.614
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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