sfrs6 protein (Salmo salar) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

sfrs6

Splicing factor, arginine/serine-rich 6 isoform X1. (334 aa)

Predicted Functional Partners:

ncbp2

0.913

nxf1

0.887

LOC106604390

0.887

LOC106603139

0.887

LOC106566080

0.846

LOC106566414

0.846

LOC106572836

0.846

LOC106582688

0.846

PCF11

0.837

sympk

0.834

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106566080	sfrs6	ENSSSAP00000020078	ENSSSAP00000009673	Serine/threonine-protein kinase SRPK1.	Splicing factor, arginine/serine-rich 6 isoform X1.	0.846
LOC106566414	sfrs6	ENSSSAP00000047661	ENSSSAP00000009673	SRSF protein kinase 1-like isoform X1.	Splicing factor, arginine/serine-rich 6 isoform X1.	0.846
LOC106572836	sfrs6	ENSSSAP00000083904	ENSSSAP00000009673	SRSF protein kinase 1-like isoform X1.	Splicing factor, arginine/serine-rich 6 isoform X1.	0.846
LOC106582688	sfrs6	ENSSSAP00000098563	ENSSSAP00000009673	SRSF protein kinase 1-like isoform X1.	Splicing factor, arginine/serine-rich 6 isoform X1.	0.846
LOC106603139	LOC106604390	ENSSSAP00000089923	ENSSSAP00000051811	Nuclear RNA export factor 1-like.	Nuclear RNA export factor 1-like isoform X1.	0.901
LOC106603139	PCF11	ENSSSAP00000089923	ENSSSAP00000034860	Nuclear RNA export factor 1-like.	Pre-mRNA cleavage complex 2 protein Pcf11.	0.607
LOC106603139	ncbp2	ENSSSAP00000089923	ENSSSAP00000035933	Nuclear RNA export factor 1-like.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.990
LOC106603139	nxf1	ENSSSAP00000089923	ENSSSAP00000051513	Nuclear RNA export factor 1-like.	Nuclear RNA export factor 1.	0.900
LOC106603139	sfrs6	ENSSSAP00000089923	ENSSSAP00000009673	Nuclear RNA export factor 1-like.	Splicing factor, arginine/serine-rich 6 isoform X1.	0.887
LOC106603139	sympk	ENSSSAP00000089923	ENSSSAP00000103928	Nuclear RNA export factor 1-like.	Symplekin.	0.721
LOC106604390	LOC106603139	ENSSSAP00000051811	ENSSSAP00000089923	Nuclear RNA export factor 1-like isoform X1.	Nuclear RNA export factor 1-like.	0.901
LOC106604390	PCF11	ENSSSAP00000051811	ENSSSAP00000034860	Nuclear RNA export factor 1-like isoform X1.	Pre-mRNA cleavage complex 2 protein Pcf11.	0.607
LOC106604390	ncbp2	ENSSSAP00000051811	ENSSSAP00000035933	Nuclear RNA export factor 1-like isoform X1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.990
LOC106604390	nxf1	ENSSSAP00000051811	ENSSSAP00000051513	Nuclear RNA export factor 1-like isoform X1.	Nuclear RNA export factor 1.	0.901
LOC106604390	sfrs6	ENSSSAP00000051811	ENSSSAP00000009673	Nuclear RNA export factor 1-like isoform X1.	Splicing factor, arginine/serine-rich 6 isoform X1.	0.887
LOC106604390	sympk	ENSSSAP00000051811	ENSSSAP00000103928	Nuclear RNA export factor 1-like isoform X1.	Symplekin.	0.721
PCF11	LOC106603139	ENSSSAP00000034860	ENSSSAP00000089923	Pre-mRNA cleavage complex 2 protein Pcf11.	Nuclear RNA export factor 1-like.	0.607
PCF11	LOC106604390	ENSSSAP00000034860	ENSSSAP00000051811	Pre-mRNA cleavage complex 2 protein Pcf11.	Nuclear RNA export factor 1-like isoform X1.	0.607
PCF11	ncbp2	ENSSSAP00000034860	ENSSSAP00000035933	Pre-mRNA cleavage complex 2 protein Pcf11.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.941
PCF11	nxf1	ENSSSAP00000034860	ENSSSAP00000051513	Pre-mRNA cleavage complex 2 protein Pcf11.	Nuclear RNA export factor 1.	0.607