STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106598260Presenilins-associated rhomboid-like protein, mitochondrial isoform X2. (403 aa)    
Predicted Functional Partners:
park2
E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.
    
 
 0.790
stml2
Stomatin-like protein 2.
   
 0.743
STOML2
Stomatin-like protein 2, mitochondrial.
   
 0.743
ENSSSAP00000006544
annotation not available
   
  
 0.694
LOC106588799
Mitochondrial import receptor subunit TOM7 homolog.
   
  
 0.694
YME1L1
ATP-dependent zinc metalloprotease YME1L1-like isoform X1.
   
 
 0.679
LOC106568699
ATP-dependent zinc metalloprotease YME1L1-like isoform X1.
   
 
 0.679
LOC106598156
ATP-dependent zinc metalloprotease YME1L1-like isoform X1.
   
 
 0.679
LOC106590300
ATP-dependent zinc metalloprotease YME1L1-like isoform X1.
   
 
 0.679
pink1
Serine/threonine-protein kinase PINK1, mitochondrial.
    
 
 0.660
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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