STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106564447Coiled-coil domain-containing protein 130 homolog. (426 aa)    
Predicted Functional Partners:
cdc40
pre-mRNA-processing factor 17.
    
 
 0.909
LOC106571808
pre-mRNA-processing factor 17-like.
    
 
 0.909
cdc5l
Cell division cycle 5-like protein.
    
 
 0.908
CDC5L
Cell division cycle 5-like protein.
    
 
 0.908
LOC106600990
116 kDa U5 small nuclear ribonucleoprotein component.
    
   0.908
LOC106607257
116 kDa U5 small nuclear ribonucleoprotein component.
    
   0.908
ENSSSAP00000006163
annotation not available
   
   0.891
LOC106609896
pre-mRNA-processing factor 19.
    
   0.891
LOC106600820
Junction plakoglobin-like isoform X1.
   
   0.891
LOC106564751
Junction plakoglobin-like.
   
   0.891
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.