STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nrf1Nuclear respiratory factor 1 isoform X4. (524 aa)    
Predicted Functional Partners:
LOC106611923
Peroxisome proliferator-activated receptor gamma coactivator 1-beta-like.
     
 0.879
LOC100136477
Peroxisome proliferator-activated receptor gamma coactivator 1-beta isoform X1.
     
 0.879
pprc1
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1.
   
 0.794
LOC106576855
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.
   
 0.794
LOC106608616
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X7.
   
 0.784
LOC106577610
Peroxisome proliferator-activated receptor gamma coactivator 1-alpha-like isoform X6.
   
 0.784
ENSSSAP00000000689
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.
   
 0.773
LOC106564355
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.
   
 0.773
LOC106575069
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
     
 0.668
LOC106588840
Cytochrome c iso-1/iso-2-like; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
     
 0.668
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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