depdc7 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

depdc7

DEP domain-containing protein 7 isoform X1. (540 aa)

Predicted Functional Partners:

LOC106560268

0.662

lnx1

0.662

LOC106592551

0.550

LOC106612624

0.550

LOC106580830

0.550

LOC106594790

0.550

plek2

0.511

hsd17b8

0.499

PLEK

0.495

ENSSSAP00000027159

0.495

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000027159	LOC106560268	ENSSSAP00000027159	ENSSSAP00000088793	Pleckstrin.	E3 ubiquitin-protein ligase LNX-like isoform X2.	0.464
ENSSSAP00000027159	depdc7	ENSSSAP00000027159	ENSSSAP00000009754	Pleckstrin.	DEP domain-containing protein 7 isoform X1.	0.495
ENSSSAP00000027159	lnx1	ENSSSAP00000027159	ENSSSAP00000095387	Pleckstrin.	E3 ubiquitin-protein ligase LNX isoform X1.	0.464
LOC106560268	ENSSSAP00000027159	ENSSSAP00000088793	ENSSSAP00000027159	E3 ubiquitin-protein ligase LNX-like isoform X2.	Pleckstrin.	0.464
LOC106560268	LOC106580830	ENSSSAP00000088793	ENSSSAP00000048380	E3 ubiquitin-protein ligase LNX-like isoform X2.	Numb-like protein isoform X2.	0.832
LOC106560268	LOC106592551	ENSSSAP00000088793	ENSSSAP00000030801	E3 ubiquitin-protein ligase LNX-like isoform X2.	Protein numb homolog.	0.710
LOC106560268	LOC106594790	ENSSSAP00000088793	ENSSSAP00000068318	E3 ubiquitin-protein ligase LNX-like isoform X2.	Protein numb homolog.	0.710
LOC106560268	LOC106612624	ENSSSAP00000088793	ENSSSAP00000035619	E3 ubiquitin-protein ligase LNX-like isoform X2.	Numb-like protein isoform X1.	0.832
LOC106560268	PLEK	ENSSSAP00000088793	ENSSSAP00000022128	E3 ubiquitin-protein ligase LNX-like isoform X2.	Pleckstrin-like.	0.464
LOC106560268	depdc7	ENSSSAP00000088793	ENSSSAP00000009754	E3 ubiquitin-protein ligase LNX-like isoform X2.	DEP domain-containing protein 7 isoform X1.	0.662
LOC106560268	hsd17b8	ENSSSAP00000088793	ENSSSAP00000036916	E3 ubiquitin-protein ligase LNX-like isoform X2.	Hydroxysteroid (17-beta) dehydrogenase 8.	0.515
LOC106560268	plek2	ENSSSAP00000088793	ENSSSAP00000000111	E3 ubiquitin-protein ligase LNX-like isoform X2.	Pleckstrin-2.	0.526
LOC106580830	LOC106560268	ENSSSAP00000048380	ENSSSAP00000088793	Numb-like protein isoform X2.	E3 ubiquitin-protein ligase LNX-like isoform X2.	0.832
LOC106580830	LOC106594790	ENSSSAP00000048380	ENSSSAP00000068318	Numb-like protein isoform X2.	Protein numb homolog.	0.905
LOC106580830	LOC106612624	ENSSSAP00000048380	ENSSSAP00000035619	Numb-like protein isoform X2.	Numb-like protein isoform X1.	0.900
LOC106580830	depdc7	ENSSSAP00000048380	ENSSSAP00000009754	Numb-like protein isoform X2.	DEP domain-containing protein 7 isoform X1.	0.550
LOC106580830	lnx1	ENSSSAP00000048380	ENSSSAP00000095387	Numb-like protein isoform X2.	E3 ubiquitin-protein ligase LNX isoform X1.	0.832
LOC106592551	LOC106560268	ENSSSAP00000030801	ENSSSAP00000088793	Protein numb homolog.	E3 ubiquitin-protein ligase LNX-like isoform X2.	0.710
LOC106592551	depdc7	ENSSSAP00000030801	ENSSSAP00000009754	Protein numb homolog.	DEP domain-containing protein 7 isoform X1.	0.550
LOC106592551	lnx1	ENSSSAP00000030801	ENSSSAP00000095387	Protein numb homolog.	E3 ubiquitin-protein ligase LNX isoform X1.	0.710