STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106570244Brachyury protein homolog A-like. (429 aa)    
Predicted Functional Partners:
LOC106560777
LOW QUALITY PROTEIN: homeobox protein not2-like.
    
 0.710
LOC106611431
Homeobox protein B-H2-like.
    
 0.710
LOC106608032
Homeobox protein Mix.1-like isoform X1.
   
 0.688
LOC106567323
POU domain protein.
   
 0.650
LOC106563125
POU domain protein.
   
 0.650
LOC106611121
Bone morphogenetic protein 4-like.
     
 0.616
bmp4
Bone morphogenetic protein 4 precursor.
     
 0.616
LOC106579553
Forkhead box protein H1-like isoform X2.
   
 
 0.596
LOC106590409
Forkhead box protein H1-like.
   
 
 0.596
gata4
Transcription factor GATA-4.
   
 
 0.561
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.