STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106568618poly(U)-binding-splicing factor PUF60-like. (417 aa)    
Predicted Functional Partners:
PUF60
poly(U)-binding-splicing factor PUF60-like isoform X3.
  
  
 
0.901
sf3a2
Splicing factor 3A subunit 2.
   
 0.831
LOC106599988
Splicing factor 3A subunit 2-like.
   
 0.831
LOC106585463
Small nuclear ribonucleoprotein Sm D3.
   
 0.785
LOC106563120
Small nuclear ribonucleoprotein Sm D3.
   
 0.785
ENSSSAP00000027874
annotation not available
   
 0.781
sf3b3-2
Splicing factor 3B subunit 3.
    
 0.777
sf3b3
Splicing factor 3B subunit 3.
    
 0.777
LOC106586372
Splicing factor 3B subunit 1 isoform X1.
   
 0.764
LOC100380860
Splicing factor 3B subunit 1 isoform X1.
   
 0.764
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.