STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100306760Ubiquitin carboxyl-terminal hydrolase. (994 aa)    
Predicted Functional Partners:
LOC106562992
polyubiquitin-B.
    
 0.876
sart3
Squamous cell carcinoma antigen recognized by T-cells 3 isoform X1.
    
 
 0.804
LOC106584988
Squamous cell carcinoma antigen recognized by T-cells 3-like isoform X1.
    
 
 0.804
LOC106592035
TNF receptor-associated factor 6-like.
    
 0.778
LOC106562692
TNF receptor-associated factor 6-like.
    
 0.778
mrpl3
39S ribosomal protein L3, mitochondrial; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.663
rnf123
E3 ubiquitin-protein ligase RNF123.
   
 0.648
mrpl16
39S ribosomal protein L16, mitochondrial isoform X2; Belongs to the universal ribosomal protein uL16 family.
    
 
 0.615
LOC106601396
E3 ubiquitin-protein ligase.
    
 0.606
ENSSSAP00000011090
SMAD specific E3 ubiquitin protein ligase 2.
    
 0.606
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.