LOC106564207 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106564207

Multivesicular body subunit 12A-like isoform X1. (286 aa)

Predicted Functional Partners:

VP37A

0.979

LOC106585126

0.970

vp37b

0.970

LOC106588905

0.966

vps28

0.966

ENSSSAP00000010379

0.946

tsg101

0.946

LOC106562990

0.918

LOC106568542

0.918

LOC106610650

0.894

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000010379	LOC106562990	ENSSSAP00000010379	ENSSSAP00000031149	annotation not available	Vacuolar protein sorting-associated protein 37B-like.	0.954
ENSSSAP00000010379	LOC106564207	ENSSSAP00000010379	ENSSSAP00000010029	annotation not available	Multivesicular body subunit 12A-like isoform X1.	0.946
ENSSSAP00000010379	LOC106568542	ENSSSAP00000010379	ENSSSAP00000106619	annotation not available	Vacuolar protein sorting-associated protein 37B-like.	0.954
ENSSSAP00000010379	LOC106585126	ENSSSAP00000010379	ENSSSAP00000111352	annotation not available	Vacuolar protein sorting-associated protein 37B-like.	0.974
ENSSSAP00000010379	LOC106588905	ENSSSAP00000010379	ENSSSAP00000046116	annotation not available	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.990
ENSSSAP00000010379	LOC106610650	ENSSSAP00000010379	ENSSSAP00000013065	annotation not available	Vacuolar protein-sorting-associated protein 25-like.	0.970
ENSSSAP00000010379	VP37A	ENSSSAP00000010379	ENSSSAP00000005102	annotation not available	Vacuolar protein sorting-associated protein 37A.	0.990
ENSSSAP00000010379	vp37b	ENSSSAP00000010379	ENSSSAP00000116974	annotation not available	Vacuolar protein sorting-associated protein 37B.	0.974
ENSSSAP00000010379	vps28	ENSSSAP00000010379	ENSSSAP00000064661	annotation not available	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.990
LOC106562990	ENSSSAP00000010379	ENSSSAP00000031149	ENSSSAP00000010379	Vacuolar protein sorting-associated protein 37B-like.	annotation not available	0.954
LOC106562990	LOC106564207	ENSSSAP00000031149	ENSSSAP00000010029	Vacuolar protein sorting-associated protein 37B-like.	Multivesicular body subunit 12A-like isoform X1.	0.918
LOC106562990	LOC106568542	ENSSSAP00000031149	ENSSSAP00000106619	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein sorting-associated protein 37B-like.	0.545
LOC106562990	LOC106585126	ENSSSAP00000031149	ENSSSAP00000111352	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein sorting-associated protein 37B-like.	0.553
LOC106562990	LOC106588905	ENSSSAP00000031149	ENSSSAP00000046116	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.978
LOC106562990	LOC106610650	ENSSSAP00000031149	ENSSSAP00000013065	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein-sorting-associated protein 25-like.	0.961
LOC106562990	VP37A	ENSSSAP00000031149	ENSSSAP00000005102	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein sorting-associated protein 37A.	0.938
LOC106562990	tsg101	ENSSSAP00000031149	ENSSSAP00000033503	Vacuolar protein sorting-associated protein 37B-like.	Tumor susceptibility gene 101 protein.	0.977
LOC106562990	vp37b	ENSSSAP00000031149	ENSSSAP00000116974	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein sorting-associated protein 37B.	0.554
LOC106562990	vps28	ENSSSAP00000031149	ENSSSAP00000064661	Vacuolar protein sorting-associated protein 37B-like.	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.978
LOC106564207	ENSSSAP00000010379	ENSSSAP00000010029	ENSSSAP00000010379	Multivesicular body subunit 12A-like isoform X1.	annotation not available	0.946