catsperd protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

catsperd

Cation channel sperm-associated protein subunit delta isoform X1. (761 aa)

Predicted Functional Partners:

catsperb

0.997

pcbd2

0.992

LOC106603651

0.990

CATSPER2

0.990

LOC106563455

0.978

catsper4

0.940

efcab9

0.939

ENSSSAP00000034674

0.938

catspere

0.922

suox

0.892

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CATSPER2	ENSSSAP00000034674	ENSSSAP00000098180	ENSSSAP00000034674	Cation channel sperm-associated protein 2 isoform X2.	annotation not available	0.961
CATSPER2	LOC106563455	ENSSSAP00000098180	ENSSSAP00000012833	Cation channel sperm-associated protein 2 isoform X2.	Cation channel sperm-associated protein 1-like isoform X1.	0.991
CATSPER2	LOC106603651	ENSSSAP00000098180	ENSSSAP00000096621	Cation channel sperm-associated protein 2 isoform X2.	Cation channel sperm-associated protein subunit gamma-like.	0.968
CATSPER2	catsper4	ENSSSAP00000098180	ENSSSAP00000047280	Cation channel sperm-associated protein 2 isoform X2.	Cation channel sperm-associated protein 4.	0.906
CATSPER2	catsperb	ENSSSAP00000098180	ENSSSAP00000078076	Cation channel sperm-associated protein 2 isoform X2.	Cation channel sperm-associated protein subunit beta isoform X1.	0.985
CATSPER2	catsperd	ENSSSAP00000098180	ENSSSAP00000010044	Cation channel sperm-associated protein 2 isoform X2.	Cation channel sperm-associated protein subunit delta isoform X1.	0.990
CATSPER2	catspere	ENSSSAP00000098180	ENSSSAP00000002425	Cation channel sperm-associated protein 2 isoform X2.	Uncharacterized protein C1orf101 homolog isoform X1.	0.472
CATSPER2	efcab9	ENSSSAP00000098180	ENSSSAP00000085348	Cation channel sperm-associated protein 2 isoform X2.	EF-hand calcium-binding domain-containing protein 9 isoform X1.	0.961
CATSPER2	pcbd2	ENSSSAP00000098180	ENSSSAP00000081081	Cation channel sperm-associated protein 2 isoform X2.	Cation channel sperm-associated protein 3 isoform X1.	0.992
ENSSSAP00000034674	CATSPER2	ENSSSAP00000034674	ENSSSAP00000098180	annotation not available	Cation channel sperm-associated protein 2 isoform X2.	0.961
ENSSSAP00000034674	LOC106563455	ENSSSAP00000034674	ENSSSAP00000012833	annotation not available	Cation channel sperm-associated protein 1-like isoform X1.	0.927
ENSSSAP00000034674	LOC106603651	ENSSSAP00000034674	ENSSSAP00000096621	annotation not available	Cation channel sperm-associated protein subunit gamma-like.	0.837
ENSSSAP00000034674	catsper4	ENSSSAP00000034674	ENSSSAP00000047280	annotation not available	Cation channel sperm-associated protein 4.	0.710
ENSSSAP00000034674	catsperb	ENSSSAP00000034674	ENSSSAP00000078076	annotation not available	Cation channel sperm-associated protein subunit beta isoform X1.	0.938
ENSSSAP00000034674	catsperd	ENSSSAP00000034674	ENSSSAP00000010044	annotation not available	Cation channel sperm-associated protein subunit delta isoform X1.	0.938
ENSSSAP00000034674	catspere	ENSSSAP00000034674	ENSSSAP00000002425	annotation not available	Uncharacterized protein C1orf101 homolog isoform X1.	0.679
ENSSSAP00000034674	pcbd2	ENSSSAP00000034674	ENSSSAP00000081081	annotation not available	Cation channel sperm-associated protein 3 isoform X1.	0.960
LOC106563455	CATSPER2	ENSSSAP00000012833	ENSSSAP00000098180	Cation channel sperm-associated protein 1-like isoform X1.	Cation channel sperm-associated protein 2 isoform X2.	0.991
LOC106563455	ENSSSAP00000034674	ENSSSAP00000012833	ENSSSAP00000034674	Cation channel sperm-associated protein 1-like isoform X1.	annotation not available	0.927
LOC106563455	LOC106603651	ENSSSAP00000012833	ENSSSAP00000096621	Cation channel sperm-associated protein 1-like isoform X1.	Cation channel sperm-associated protein subunit gamma-like.	0.990