STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000010070Tetraspanin-8-like. (111 aa)    
Predicted Functional Partners:
ptprc
Receptor-type tyrosine-protein phosphatase C isoform X1.
     
 0.585
spata20
Spermatogenesis-associated protein 20.
      
 0.480
sergef
Secretion-regulating guanine nucleotide exchange factor isoform X1.
      
 0.455
LOC106587122
Synaptotagmin-13-like isoform X1.
     
 0.449
LOC106561962
Synaptotagmin-13-like.
     
 0.449
LOC106573148
Unique cartilage matrix-associated protein-like.
      
 0.435
ENSSSAP00000088599
annotation not available
      
 0.432
spata18
Mitochondria-eating protein.
      
 0.432
LOC106573129
Zinc finger C3H1 domain-containing protein-like isoform X1.
      
 0.431
LOC106561542
Zinc finger C3H1 domain-containing protein-like isoform X1.
      
 0.431
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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