ENSSSAP00000010087 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSSSAP00000010087

annotation not available (477 aa)

Predicted Functional Partners:

myd88

0.970

LOC106584543

0.953

LOC106580180

0.871

TMED3

0.871

LOC106585845

0.871

LOC106588119

0.871

LOC106594845

0.869

LOC106566344

0.809

irf-3

0.757

mx2

0.753

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000010087	LOC106566344	ENSSSAP00000010087	ENSSSAP00000061794	annotation not available	Interleukin-1 receptor-associated kinase 1-like isoform X1.	0.809
ENSSSAP00000010087	LOC106580180	ENSSSAP00000010087	ENSSSAP00000012552	annotation not available	Transmembrane emp24 domain-containing protein 7-like.	0.871
ENSSSAP00000010087	LOC106584543	ENSSSAP00000010087	ENSSSAP00000059160	annotation not available	TIR domain-containing adapter molecule 1-like.	0.953
ENSSSAP00000010087	LOC106585845	ENSSSAP00000010087	ENSSSAP00000042752	annotation not available	Transmembrane emp24 domain-containing protein 7-like.	0.871
ENSSSAP00000010087	LOC106588119	ENSSSAP00000010087	ENSSSAP00000064847	annotation not available	Transmembrane emp24 domain-containing protein 3-like.	0.871
ENSSSAP00000010087	LOC106594845	ENSSSAP00000010087	ENSSSAP00000068962	annotation not available	Protein unc-93 homolog B1-like.	0.869
ENSSSAP00000010087	TMED3	ENSSSAP00000010087	ENSSSAP00000016089	annotation not available	Transmembrane emp24 domain-containing protein 3 precursor.	0.871
ENSSSAP00000010087	irf-3	ENSSSAP00000010087	ENSSSAP00000045878	annotation not available	Interferon regulatory factor 3 isoform X1.	0.757
ENSSSAP00000010087	mx2	ENSSSAP00000010087	ENSSSAP00000109246	annotation not available	Myxovirus resistance 2 isoform X1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.753
ENSSSAP00000010087	myd88	ENSSSAP00000010087	ENSSSAP00000080060	annotation not available	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.970
LOC106566344	ENSSSAP00000010087	ENSSSAP00000061794	ENSSSAP00000010087	Interleukin-1 receptor-associated kinase 1-like isoform X1.	annotation not available	0.809
LOC106566344	LOC106580180	ENSSSAP00000061794	ENSSSAP00000012552	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Transmembrane emp24 domain-containing protein 7-like.	0.858
LOC106566344	LOC106584543	ENSSSAP00000061794	ENSSSAP00000059160	Interleukin-1 receptor-associated kinase 1-like isoform X1.	TIR domain-containing adapter molecule 1-like.	0.965
LOC106566344	LOC106585845	ENSSSAP00000061794	ENSSSAP00000042752	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Transmembrane emp24 domain-containing protein 7-like.	0.858
LOC106566344	LOC106588119	ENSSSAP00000061794	ENSSSAP00000064847	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Transmembrane emp24 domain-containing protein 3-like.	0.858
LOC106566344	LOC106594845	ENSSSAP00000061794	ENSSSAP00000068962	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Protein unc-93 homolog B1-like.	0.467
LOC106566344	TMED3	ENSSSAP00000061794	ENSSSAP00000016089	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Transmembrane emp24 domain-containing protein 3 precursor.	0.858
LOC106566344	irf-3	ENSSSAP00000061794	ENSSSAP00000045878	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Interferon regulatory factor 3 isoform X1.	0.738
LOC106566344	myd88	ENSSSAP00000061794	ENSSSAP00000080060	Interleukin-1 receptor-associated kinase 1-like isoform X1.	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response.	0.999
LOC106580180	ENSSSAP00000010087	ENSSSAP00000012552	ENSSSAP00000010087	Transmembrane emp24 domain-containing protein 7-like.	annotation not available	0.871