STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106581236KH domain-containing, RNA-binding, signal transduction-associated protein 1-like isoform X1. (398 aa)    
Predicted Functional Partners:
rbpms
RNA-binding protein with multiple splicing.
    
 
 0.598
med29
Mediator of RNA polymerase II transcription subunit 29.
    
   0.582
ENSSSAP00000116555
annotation not available
    
   0.582
med23
Mediator of RNA polymerase II transcription subunit 23 isoform X4.
    
   0.582
ENSSSAP00000032914
PTK6 protein tyrosine kinase 6b.
    
 0.573
fyn
Tyrosine-protein kinase.
    
 0.573
LOC106566804
Tyrosine-protein kinase.
    
 0.573
LOC106572901
Tyrosine-protein kinase.
    
 0.573
LOC106572252
Tyrosine-protein kinase.
    
 0.573
LOC106571317
Tyrosine-protein kinase.
    
 0.573
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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