Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106610476Protein sidekick-2-like. (2170 aa)    
Predicted Functional Partners:
LOC106581133
Histone H4 transcription factor-like.
      
 0.563
LOC106613002
Histone H4 transcription factor-like isoform X3.
      
 0.563
MRE11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
    
 0.542
Mre11
MRE11 homolog, double strand break repair nuclease.
    
 0.542
LOC106609093
Protein DENND6B-like.
      
 0.507
dennd6b
Protein DENND6B isoform X1.
      
 0.507
LOC106588794
Integrin beta; Belongs to the integrin beta chain family.
    
 0.496
ENSSSAP00000055454
annotation not available
    
 0.496
bic1a
Bicaudal C homolog 1-A.
      
 0.486
LOC106604787
Protein bicaudal C homolog 1-A-like isoform X1.
      
 0.486
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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