LOC106601741 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106601741

Kelch-like protein 20. (621 aa)

Predicted Functional Partners:

bbs7

0.704

LOC106612448

0.701

LOC106600593

0.701

CUL3

0.701

LOC106580681

0.701

LOC106611037

0.630

LOC106591546

0.630

LOC106568378

0.630

LOC106561687

0.630

bbs9

0.617

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CUL3	LOC106601741	ENSSSAP00000077305	ENSSSAP00000010243	Cullin-3-like; Belongs to the cullin family.	Kelch-like protein 20.	0.701
LOC106561687	LOC106601741	ENSSSAP00000050094	ENSSSAP00000010243	Roquin-2-like isoform X1.	Kelch-like protein 20.	0.630
LOC106568378	LOC106601741	ENSSSAP00000026563	ENSSSAP00000010243	Roquin-2-like isoform X1.	Kelch-like protein 20.	0.630
LOC106580681	LOC106601741	ENSSSAP00000106226	ENSSSAP00000010243	Cullin-3; Belongs to the cullin family.	Kelch-like protein 20.	0.701
LOC106591546	LOC106601741	ENSSSAP00000005308	ENSSSAP00000010243	Tetratricopeptide repeat protein 8-like isoform X1.	Kelch-like protein 20.	0.630
LOC106591546	LOC106611037	ENSSSAP00000005308	ENSSSAP00000004712	Tetratricopeptide repeat protein 8-like isoform X1.	Tetratricopeptide repeat protein 8-like isoform X1.	0.542
LOC106591546	bbs7	ENSSSAP00000005308	ENSSSAP00000008280	Tetratricopeptide repeat protein 8-like isoform X1.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.999
LOC106591546	bbs9	ENSSSAP00000005308	ENSSSAP00000036471	Tetratricopeptide repeat protein 8-like isoform X1.	Protein PTHB1 isoform X1.	0.986
LOC106600593	LOC106601741	ENSSSAP00000077209	ENSSSAP00000010243	Cullin-3-like; Belongs to the cullin family.	Kelch-like protein 20.	0.701
LOC106601741	CUL3	ENSSSAP00000010243	ENSSSAP00000077305	Kelch-like protein 20.	Cullin-3-like; Belongs to the cullin family.	0.701
LOC106601741	LOC106561687	ENSSSAP00000010243	ENSSSAP00000050094	Kelch-like protein 20.	Roquin-2-like isoform X1.	0.630
LOC106601741	LOC106568378	ENSSSAP00000010243	ENSSSAP00000026563	Kelch-like protein 20.	Roquin-2-like isoform X1.	0.630
LOC106601741	LOC106580681	ENSSSAP00000010243	ENSSSAP00000106226	Kelch-like protein 20.	Cullin-3; Belongs to the cullin family.	0.701
LOC106601741	LOC106591546	ENSSSAP00000010243	ENSSSAP00000005308	Kelch-like protein 20.	Tetratricopeptide repeat protein 8-like isoform X1.	0.630
LOC106601741	LOC106600593	ENSSSAP00000010243	ENSSSAP00000077209	Kelch-like protein 20.	Cullin-3-like; Belongs to the cullin family.	0.701
LOC106601741	LOC106611037	ENSSSAP00000010243	ENSSSAP00000004712	Kelch-like protein 20.	Tetratricopeptide repeat protein 8-like isoform X1.	0.630
LOC106601741	LOC106612448	ENSSSAP00000010243	ENSSSAP00000047131	Kelch-like protein 20.	Cullin-3-like.	0.701
LOC106601741	bbs7	ENSSSAP00000010243	ENSSSAP00000008280	Kelch-like protein 20.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.704
LOC106601741	bbs9	ENSSSAP00000010243	ENSSSAP00000036471	Kelch-like protein 20.	Protein PTHB1 isoform X1.	0.617
LOC106611037	LOC106591546	ENSSSAP00000004712	ENSSSAP00000005308	Tetratricopeptide repeat protein 8-like isoform X1.	Tetratricopeptide repeat protein 8-like isoform X1.	0.542