STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106577446Coiled-coil domain-containing protein 28A-like. (180 aa)    
Predicted Functional Partners:
bbs7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
    
 
 0.621
bbs10
Bardet-Biedl syndrome 10 protein; Belongs to the TCP-1 chaperonin family.
    
 
 0.581
mks1
Meckel syndrome type 1 protein.
      
 0.561
bbs2
Bardet-Biedl syndrome 2 protein homolog.
    
 
 0.544
tmem234
Transmembrane protein 234.
      
 0.514
LOC106611037
Tetratricopeptide repeat protein 8-like isoform X1.
    
 
 0.513
LOC106591546
Tetratricopeptide repeat protein 8-like isoform X1.
    
 
 0.513
LOC106604585
Bardet-Biedl syndrome 12 protein-like.
      
 0.465
ENSSSAP00000097800
annotation not available
      
 0.465
cep290
Centrosomal protein of 290 kDa isoform X2.
      
 0.459
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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