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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607423Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily. (1191 aa)    
Predicted Functional Partners:
PLN
Cardiac phospholamban-like.
    
 0.577
LOC106571382
Cardiac phospholamban-like isoform X2.
    
 0.577
msto1
Protein misato homolog 1.
      
 0.565
ENSSSAP00000065068
annotation not available
      
 0.565
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
      
 0.559
LOC106612729
FXYD domain-containing ion transport regulator; Belongs to the FXYD family.
    
  0.529
znf280d
Zinc finger protein 280D isoform X1.
    
 0.516
LOC106605118
Multiple coagulation factor deficiency protein 2 homolog isoform X1.
      
 0.510
mcfd2
Multiple coagulation factor deficiency protein 2 homolog.
      
 0.510
nhlrc2
NHL repeat-containing protein 2.
    
 
 0.510
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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