STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106581430Protein FAM179B-like. (978 aa)    
Predicted Functional Partners:
rrp36
Ribosomal RNA processing protein 36 homolog.
      
 0.584
ift140
Intraflagellar transport protein 140 homolog isoform X2.
      
 0.577
spata48
Uncharacterized protein C7orf72 homolog isoform X1.
      
 0.511
tmem43
Transmembrane protein 43.
      
 0.485
LOC100195238
RNA-binding protein 7 isoform X1.
      
 0.471
ift122
Intraflagellar transport protein 122 homolog isoform X2.
      
 0.467
LOC106578245
Proline-rich protein 35-like.
      
 0.467
LOC106579202
Proline-rich protein 35-like.
      
 0.467
KBTBD12
Kelch repeat and BTB domain-containing protein 12-like.
      
 0.453
LOC106565366
Kelch repeat and BTB domain-containing protein 12-like.
      
 0.453
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.