STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106591229Uncharacterized protein LOC106591229. (142 aa)    
Predicted Functional Partners:
LOC106564360
H-2 class II histocompatibility antigen, A-Q alpha chain-like.
    
  0.717
LOC106567571
H-2 class II histocompatibility antigen, A-Q alpha chain-like isoform X1.
    
  0.717
ENSSSAP00000034692
annotation not available
    
  0.598
ENSSSAP00000083538
annotation not available
    
  0.598
LOC106569843
BOLA class I histocompatibility antigen, alpha chain BL3-7-like; Belongs to the MHC class I family.
    
  0.598
LOC106564356
Rano class II histocompatibility antigen, A beta chain-like.
   
  0.591
LOC106586334
H-2 class II histocompatibility antigen, E-S beta chain-like isoform X1.
   
  0.591
LOC106574265
H-2 class II histocompatibility antigen, E-S beta chain-like.
   
  0.591
ENSSSAP00000073275
annotation not available
   
  0.591
ENSSSAP00000099071
annotation not available
   
  0.591
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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