STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611033Rab9 effector protein with kelch motifs-like isoform X1. (574 aa)    
Predicted Functional Partners:
cssa13hxorf56
UPF0428 protein CXorf56 homolog.
    
   0.606
drg1
Developmentally-regulated GTP-binding protein 1.
    
   0.546
drg1-2
Developmentally-regulated GTP-binding protein 1.
    
   0.546
ENSSSAP00000023159
annotation not available
    
   0.513
slc25a1
Tricarboxylate transport protein, mitochondrial; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.513
ENSSSAP00000036217
annotation not available
    
   0.513
cssa16h15orf40
UPF0235 protein C15orf40 homolog.
    
   0.513
pole2
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
    
   0.513
LOC106568272
Tricarboxylate transport protein, mitochondrial; Belongs to the mitochondrial carrier (TC 2.A.29) family.
    
   0.513
SKP1
S-phase kinase associated protein 1.
    
 
 0.486
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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