Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609108Protein FAM19A5-like. (144 aa)    
Predicted Functional Partners:
hdlbp
Vigilin isoform X2.
      
 0.667
gal3st4
galactose-3-O-sulfotransferase 4.
      
 0.627
wdr6
WD repeat-containing protein 6.
      
 0.570
LOC106608162
Probable G-protein coupled receptor 176.
      
 0.566
LOC106571060
Probable G-protein coupled receptor 176.
      
 0.566
LOC106575501
Integral membrane protein GPR180-like.
      
 0.566
ENSSSAP00000115158
annotation not available
      
 0.566
tonsl
Tonsoku-like protein.
      
 0.558
LOC106613370
Glioma tumor suppressor candidate region gene 1 protein-like.
      
 0.555
LOC106581601
Glioma tumor suppressor candidate region gene 1 protein-like.
      
 0.555
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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