STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACTC1Actin, alpha cardiac muscle 1-like. (377 aa)    
Predicted Functional Partners:
LOC106576067
Troponin T, cardiac muscle-like isoform X4.
   
 0.927
LOC106593306
Troponin T, cardiac muscle isoforms-like.
   
 0.927
LOC106582714
Troponin T, cardiac muscle isoforms-like isoform X2.
   
 0.927
LOC106561647
Troponin T, cardiac muscle isoforms-like.
   
 0.927
actr8
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize (By similarity); Belongs to the actin family. ARP8 subfamily.
    
 0.844
mysm1
Histone H2A deubiquitinase MYSM1.
   
 0.839
LOC106613979
Histone H2A deubiquitinase MYSM1-like.
   
 0.839
tpm4
Tropomyosin alpha-4 chain isoform X2; Belongs to the tropomyosin family.
   
 0.836
tpm3
Tropomyosin alpha-3 chain isoform X3; Belongs to the tropomyosin family.
   
 0.836
LOC106562411
Tropomyosin alpha-1 chain-like isoform X1; Belongs to the tropomyosin family.
   
 0.836
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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