STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106611423LETM1 and EF-hand domain-containing protein 1, mitochondrial-like isoform X1. (270 aa)    
Predicted Functional Partners:
mrpl22
39S ribosomal protein L22, mitochondrial isoform X1; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.659
rpl18
60S ribosomal protein L18.
    
   0.626
RL35A
60S ribosomal protein L35a.
    
   0.626
rs15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
   0.626
rps9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
    
 
 0.617
rps9-2
Ribosomal protein S9.
    
 
 0.617
rl23
60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
    
   0.609
LOC106601262
60S ribosomal protein L23.
    
   0.609
LOC106563677
60S ribosomal protein L17-like.
   
 
 0.604
rpl17
60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.604
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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