Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC106563533Tetraspanin. (241 aa)    
Predicted Functional Partners:
LOC106575514
Prostaglandin F2 receptor negative regulator-like.
    
 
 0.809
ENSSSAP00000115182
Si:ch211-132g1.7.
    
 
 0.809
LOC106573420
Tetraspanin.
   
 
 0.783
LOC106561241
Tetraspanin.
   
 
 0.783
igsf8
Immunoglobulin superfamily member 8.
    
 
 0.763
tsg101
Tumor susceptibility gene 101 protein.
      
 0.747
LOC106586760
Lysosome-associated membrane glycoprotein 1-like.
   
 
 0.594
LOC106581974
Lysosome-associated membrane glycoprotein 1-like.
   
 
 0.594
LOC106561774
Disintegrin and metalloproteinase domain-containing protein 10-like.
    
 0.571
adam10
ADAM metallopeptidase domain 10.
    
 0.571
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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