STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106571145Enhancer of rudimentary homolog; May have a role in the cell cycle. (139 aa)    
Predicted Functional Partners:
LOC106570608
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
  
 0.725
SNRPD1
Small nuclear ribonucleoprotein D1 polypeptide.
   
  
 0.725
ruxe-2
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
    0.708
ruxe
Small nuclear ribonucleoprotein E.
   
    0.705
ruxg
Small nuclear ribonucleoprotein G.
   
    0.690
ENSSSAP00000083996
Small nuclear ribonucleoprotein polypeptide G.
   
    0.683
ENSSSAP00000005812
annotation not available
   
 
 0.654
LOC106573598
Chromatin target of PRMT1 protein-like isoform X1.
   
 
 0.654
ENSSSAP00000061428
Chromatin target of PRMT1a.
   
 
 0.654
LOC106569886
Chromatin target of PRMT1 protein-like.
   
 
 0.654
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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