STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106604541SEC23-interacting protein-like isoform X1. (977 aa)    
Predicted Functional Partners:
sec13
Protein SEC13 homolog isoform X1; Belongs to the WD repeat SEC13 family.
    
 0.752
ENSSSAP00000055896
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.752
ENSSSAP00000076202
annotation not available
    
 0.752
sec16a
Protein transport protein sec16; Plays a role in the organization of the endoplasmic reticulum exit sites (ERES), also known as transitional endoplasmic reticulum (tER). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus.
     
 0.666
LOC106560878
Protein transport protein Sec31A-like.
    
 0.661
ENSSSAP00000020365
Protein transport protein Sec31A-like.
    
 0.661
ENSSSAP00000021358
SEC31 homolog B, COPII coat complex component.
    
 0.661
LOC106568322
Protein transport protein Sec31A-like isoform X5.
    
 0.661
LOC106562280
Protein transport protein Sec31A-like isoform X2.
    
 0.661
lman1
Protein ERGIC-53 isoform X2.
     
 0.655
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.