STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ap5s1AP-5 complex subunit sigma-1. (200 aa)    
Predicted Functional Partners:
ap5m1
AP-5 complex subunit mu-1; Belongs to the adaptor complexes medium subunit family.
    
 0.992
spg11
Spatacsin isoform X2.
    
 
 0.971
K0415
K0415 protein.
    
 0.938
chek1
Serine/threonine-protein kinase Chk1; Belongs to the protein kinase superfamily.
     
  0.871
LOC106585648
Serine/threonine-protein kinase Chk2-like isoform X2.
     
  0.812
LOC106580118
Serine/threonine-protein kinase Chk2-like isoform X1.
     
  0.812
LOC106610894
Arginine/serine-rich protein 1-like.
      
 0.768
LOC106603720
14-3-3 protein epsilon-like isoform X2; Belongs to the 14-3-3 family.
     
  0.758
LOC106612660
14-3-3 protein epsilon-like isoform X1; Belongs to the 14-3-3 family.
     
  0.758
LOC106580784
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide 1; Belongs to the 14-3-3 family.
     
  0.758
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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