Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609820Transmembrane protein 60-like. (133 aa)    
Predicted Functional Partners:
TMEM236
Transmembrane protein 236-like.
      
 0.483
TMEM236-2
Transmembrane protein 236-like.
      
 0.483
LOC106579764
Transmembrane protein 50A-like isoform X1.
      
 0.473
TMEM50B
Transmembrane protein 50B.
      
 0.473
TM50B
Transmembrane protein 50B.
      
 0.473
LOC106566294
Tumor protein D54-like isoform X1.
      
 0.455
LOC106572880
Tumor protein D54-like isoform X4.
      
 0.455
tmem217
Transmembrane protein 217.
      
 0.453
LOC106602067
Golgi apparatus membrane protein TVP23 homolog B-like.
   
  
 0.430
ENSSSAP00000005149
Trans-golgi network vesicle protein 23 homolog B (S. cerevisiae).
   
  
 0.430
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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