STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609821Putative homeodomain transcription factor 2. (282 aa)    
Predicted Functional Partners:
MSL3
Male-specific lethal 3 homolog isoform X1.
    
 0.862
msl2
Male-specific lethal 2-like 1.
    
 0.788
LOC106590518
E3 ubiquitin-protein ligase MSL2-like.
    
 0.788
ENSSSAP00000066522
annotation not available
    
 0.627
maml1
Mastermind-like protein 1 isoform X1.
   
 0.558
LOC106604571
Mastermind-like protein 1 isoform X1.
   
 0.558
rpc4
DNA-directed RNA polymerase III subunit RPC4 isoform X1.
    
 0.542
POLR3D
DNA-directed RNA polymerase III subunit RPC4-like.
    
 0.542
shprh
E3 ubiquitin-protein ligase SHPRH isoform X1.
    
 0.526
snw1
LOW QUALITY PROTEIN: SNW domain-containing protein 1.
   
  0.519
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.