LOC106568295 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106568295

Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (602 aa)

Predicted Functional Partners:

GAB1

0.968

syk

0.961

LOC106610242

0.960

jak2

0.955

LOC106568442

0.955

LOC106585396

0.955

LOC106566948

0.901

LOC106562610

0.900

grb2

0.880

grb2-2

0.880

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAB1	LOC106562610	ENSSSAP00000107198	ENSSSAP00000117629	GRB2-associated-binding protein 1 isoform X3.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.968
GAB1	LOC106566948	ENSSSAP00000107198	ENSSSAP00000060065	GRB2-associated-binding protein 1 isoform X3.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.968
GAB1	LOC106568295	ENSSSAP00000107198	ENSSSAP00000010611	GRB2-associated-binding protein 1 isoform X3.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.968
GAB1	LOC106568442	ENSSSAP00000107198	ENSSSAP00000039696	GRB2-associated-binding protein 1 isoform X3.	Tyrosine-protein kinase.	0.486
GAB1	LOC106585396	ENSSSAP00000107198	ENSSSAP00000084081	GRB2-associated-binding protein 1 isoform X3.	Tyrosine-protein kinase.	0.486
GAB1	LOC106610242	ENSSSAP00000107198	ENSSSAP00000007546	GRB2-associated-binding protein 1 isoform X3.	GRB2-associated-binding protein 1-like isoform X2.	0.623
GAB1	grb2	ENSSSAP00000107198	ENSSSAP00000000574	GRB2-associated-binding protein 1 isoform X3.	Growth factor receptor-bound protein 2 isoform X1.	0.999
GAB1	grb2-2	ENSSSAP00000107198	ENSSSAP00000010856	GRB2-associated-binding protein 1 isoform X3.	Growth factor receptor-bound protein 2.	0.991
GAB1	jak2	ENSSSAP00000107198	ENSSSAP00000020319	GRB2-associated-binding protein 1 isoform X3.	Tyrosine-protein kinase.	0.486
LOC106562610	GAB1	ENSSSAP00000117629	ENSSSAP00000107198	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	GRB2-associated-binding protein 1 isoform X3.	0.968
LOC106562610	LOC106566948	ENSSSAP00000117629	ENSSSAP00000060065	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.901
LOC106562610	LOC106568295	ENSSSAP00000117629	ENSSSAP00000010611	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	0.900
LOC106562610	LOC106568442	ENSSSAP00000117629	ENSSSAP00000039696	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.955
LOC106562610	LOC106585396	ENSSSAP00000117629	ENSSSAP00000084081	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.955
LOC106562610	LOC106610242	ENSSSAP00000117629	ENSSSAP00000007546	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	GRB2-associated-binding protein 1-like isoform X2.	0.960
LOC106562610	grb2	ENSSSAP00000117629	ENSSSAP00000000574	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Growth factor receptor-bound protein 2 isoform X1.	0.880
LOC106562610	grb2-2	ENSSSAP00000117629	ENSSSAP00000010856	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Growth factor receptor-bound protein 2.	0.880
LOC106562610	jak2	ENSSSAP00000117629	ENSSSAP00000020319	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.955
LOC106562610	syk	ENSSSAP00000117629	ENSSSAP00000106369	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Tyrosine-protein kinase.	0.961
LOC106566948	GAB1	ENSSSAP00000060065	ENSSSAP00000107198	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	GRB2-associated-binding protein 1 isoform X3.	0.968