LOC106607418 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106607418

Bromodomain-containing protein 4-like isoform X2. (1534 aa)

Predicted Functional Partners:

cdk9

0.799

dmap1

0.722

taf7

0.719

ENSSSAP00000109872

0.719

jmjd6

0.693

LOC106585046

0.651

LOC106580439

0.651

LOC106566901

0.644

LOC106572360

0.644

ruvbl2

0.618

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000109872	LOC106607418	ENSSSAP00000109872	ENSSSAP00000010631	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Bromodomain-containing protein 4-like isoform X2.	0.719
LOC106566901	LOC106607418	ENSSSAP00000075532	ENSSSAP00000010631	Transcription factor E2F1-like.	Bromodomain-containing protein 4-like isoform X2.	0.644
LOC106572360	LOC106607418	ENSSSAP00000110535	ENSSSAP00000010631	Transcription factor E2F1-like isoform X2.	Bromodomain-containing protein 4-like isoform X2.	0.644
LOC106580439	LOC106607418	ENSSSAP00000067026	ENSSSAP00000010631	Histone-lysine N-methyltransferase NSD3-like isoform X1.	Bromodomain-containing protein 4-like isoform X2.	0.651
LOC106580439	jmjd6	ENSSSAP00000067026	ENSSSAP00000001654	Histone-lysine N-methyltransferase NSD3-like isoform X1.	Histone arginine demethylase JMJD6.	0.511
LOC106585046	LOC106607418	ENSSSAP00000064177	ENSSSAP00000010631	Histone-lysine N-methyltransferase NSD3-like isoform X2.	Bromodomain-containing protein 4-like isoform X2.	0.651
LOC106585046	jmjd6	ENSSSAP00000064177	ENSSSAP00000001654	Histone-lysine N-methyltransferase NSD3-like isoform X2.	Histone arginine demethylase JMJD6.	0.511
LOC106607418	ENSSSAP00000109872	ENSSSAP00000010631	ENSSSAP00000109872	Bromodomain-containing protein 4-like isoform X2.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.719
LOC106607418	LOC106566901	ENSSSAP00000010631	ENSSSAP00000075532	Bromodomain-containing protein 4-like isoform X2.	Transcription factor E2F1-like.	0.644
LOC106607418	LOC106572360	ENSSSAP00000010631	ENSSSAP00000110535	Bromodomain-containing protein 4-like isoform X2.	Transcription factor E2F1-like isoform X2.	0.644
LOC106607418	LOC106580439	ENSSSAP00000010631	ENSSSAP00000067026	Bromodomain-containing protein 4-like isoform X2.	Histone-lysine N-methyltransferase NSD3-like isoform X1.	0.651
LOC106607418	LOC106585046	ENSSSAP00000010631	ENSSSAP00000064177	Bromodomain-containing protein 4-like isoform X2.	Histone-lysine N-methyltransferase NSD3-like isoform X2.	0.651
LOC106607418	cdk9	ENSSSAP00000010631	ENSSSAP00000090031	Bromodomain-containing protein 4-like isoform X2.	Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily.	0.799
LOC106607418	dmap1	ENSSSAP00000010631	ENSSSAP00000039741	Bromodomain-containing protein 4-like isoform X2.	DNA methyltransferase 1-associated protein 1 isoform X2.	0.722
LOC106607418	jmjd6	ENSSSAP00000010631	ENSSSAP00000001654	Bromodomain-containing protein 4-like isoform X2.	Histone arginine demethylase JMJD6.	0.693
LOC106607418	ruvbl2	ENSSSAP00000010631	ENSSSAP00000044206	Bromodomain-containing protein 4-like isoform X2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.618
LOC106607418	taf7	ENSSSAP00000010631	ENSSSAP00000073155	Bromodomain-containing protein 4-like isoform X2.	Transcription initiation factor TFIID subunit 7.	0.719
cdk9	LOC106607418	ENSSSAP00000090031	ENSSSAP00000010631	Cyclin-dependent kinase 9 isoform X1; Belongs to the protein kinase superfamily.	Bromodomain-containing protein 4-like isoform X2.	0.799
dmap1	LOC106607418	ENSSSAP00000039741	ENSSSAP00000010631	DNA methyltransferase 1-associated protein 1 isoform X2.	Bromodomain-containing protein 4-like isoform X2.	0.722
dmap1	ruvbl2	ENSSSAP00000039741	ENSSSAP00000044206	DNA methyltransferase 1-associated protein 1 isoform X2.	RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding.	0.999