STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601300Cysteine-rich motor neuron 1 protein isoform X2. (1035 aa)    
Predicted Functional Partners:
NUP214
Nuclear pore complex protein Nup214-like isoform X2.
    
 0.702
adamts13
A disintegrin and metalloproteinase with thrombospondin motifs 13.
    
 0.676
nup93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
    
 0.657
frem1
FRAS1-related extracellular matrix protein 1.
    
 0.655
aaas
Aladin.
    
 0.655
LOC106591976
Nuclear pore complex protein Nup50-like.
     
 0.621
NUP98
Nuclear pore complex protein Nup98-Nup96-like isoform X1.
    
 0.620
LOC106567908
Nuclear pore complex protein Nup98-Nup96-like isoform X1.
    
 0.620
LOC106607749
Nucleoporin Nup43-like.
    
 0.618
LOC106571302
Nucleoporin Nup43-like.
    
 0.618
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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