LOC106608662 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106608662

G-protein coupled receptor 26-like. (339 aa)

Predicted Functional Partners:

wdr35

0.494

haus3

0.434

LOC106565751

0.408

LOC106563266

0.408

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106563266	LOC106608662	ENSSSAP00000059860	ENSSSAP00000010824	BMP/retinoic acid-inducible neural-specific protein 1.	G-protein coupled receptor 26-like.	0.408
LOC106563266	wdr35	ENSSSAP00000059860	ENSSSAP00000092567	BMP/retinoic acid-inducible neural-specific protein 1.	WD repeat-containing protein 35.	0.593
LOC106565751	LOC106608662	ENSSSAP00000027830	ENSSSAP00000010824	BMP/retinoic acid-inducible neural-specific protein 1-like.	G-protein coupled receptor 26-like.	0.408
LOC106565751	wdr35	ENSSSAP00000027830	ENSSSAP00000092567	BMP/retinoic acid-inducible neural-specific protein 1-like.	WD repeat-containing protein 35.	0.593
LOC106608662	LOC106563266	ENSSSAP00000010824	ENSSSAP00000059860	G-protein coupled receptor 26-like.	BMP/retinoic acid-inducible neural-specific protein 1.	0.408
LOC106608662	LOC106565751	ENSSSAP00000010824	ENSSSAP00000027830	G-protein coupled receptor 26-like.	BMP/retinoic acid-inducible neural-specific protein 1-like.	0.408
LOC106608662	haus3	ENSSSAP00000010824	ENSSSAP00000023359	G-protein coupled receptor 26-like.	HAUS augmin-like complex subunit 3.	0.434
LOC106608662	wdr35	ENSSSAP00000010824	ENSSSAP00000092567	G-protein coupled receptor 26-like.	WD repeat-containing protein 35.	0.494
haus3	LOC106608662	ENSSSAP00000023359	ENSSSAP00000010824	HAUS augmin-like complex subunit 3.	G-protein coupled receptor 26-like.	0.434
wdr35	LOC106563266	ENSSSAP00000092567	ENSSSAP00000059860	WD repeat-containing protein 35.	BMP/retinoic acid-inducible neural-specific protein 1.	0.593
wdr35	LOC106565751	ENSSSAP00000092567	ENSSSAP00000027830	WD repeat-containing protein 35.	BMP/retinoic acid-inducible neural-specific protein 1-like.	0.593
wdr35	LOC106608662	ENSSSAP00000092567	ENSSSAP00000010824	WD repeat-containing protein 35.	G-protein coupled receptor 26-like.	0.494