Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000010830Retinol binding protein 4, like. (177 aa)    
Predicted Functional Partners:
LOC106605819
Recoverin-like.
   
  
 0.618
reco
Recoverin.
   
  
 0.604
LOC106578857
Recoverin-like.
   
  
 0.604
GCG
Glucagon-2.
   
  
 0.591
LOC106588288
Visinin-like.
   
  
 0.581
LOC106602844
Guanylyl cyclase-activating protein 1-like.
      
 0.544
st1s3
Sulfotransferase; Belongs to the sulfotransferase 1 family.
      
 0.501
ccdc58
Coiled-coil domain-containing protein 58; Belongs to the CCDC58 family.
      
 0.450
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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