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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106607015Nucleosome-remodeling factor subunit BPTF-like. (330 aa)    
Predicted Functional Partners:
LOC106602346
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5.
   
 
 0.742
LOC106602358
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like.
   
 
 0.742
LOC106567799
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like.
   
 
 0.742
ENSSSAP00000102956
annotation not available
   
 
 0.742
LOC106603320
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5-like.
   
 
 0.742
LOC106603709
Remodeling and spacing factor 1-like.
   
 
 0.672
LOC106612877
Remodeling and spacing factor 1-like isoform X1.
   
 
 0.672
LOC106567587
Remodeling and spacing factor 1-like isoform X1.
   
 
 0.672
chd1l
chromodomain-helicase-DNA-binding protein 1-like.
   
 
 0.641
LOC106606339
Lymphocyte-specific helicase-like isoform X1.
   
 
 0.641
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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