STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC1065644564-aminobutyrate aminotransferase, mitochondrial-like; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (499 aa)    
Predicted Functional Partners:
SSDH
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.981
upb1
Beta-ureidopropionase isoform X1.
  
 
 0.954
aldh7a1
Aldehyde dehydrogenase family 7 member A1 homolog; Belongs to the aldehyde dehydrogenase family.
  
 0.950
aldh16a1
Aldehyde dehydrogenase family 16 member A1.
  
 0.949
aldh9a1
Aldehyde dehydrogenase family 9 member A1-A; Belongs to the aldehyde dehydrogenase family.
  
 0.949
gad2
Glutamate decarboxylase 2.
  
 0.949
LOC106601716
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.948
LOC106606778
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.948
LOC106602847
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.948
LOC106613311
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.948
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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